# MCAT Assistant - user guide
# Each entry explains what the feature does and how to use it.
# UI labels are shown as they appear in MCAT.
no_sample=No measurement data is loaded in Sample. Use File > Open Data or drag and drop measurement files into the Sample pane.\nNames containing _100ppb or ##100 are automatically assigned Group=CC and Conc.=100. Review these values after loading.
no_compound=No compounds are available in Compound. Check the loaded measurement data and compound settings.
ready=Select a compound in Compound and specify a peak range in Chromatogram to quantify it.\nQuantitation results are updated automatically in Edit Sheet and Report Sheet when those windows are open.
workspace=Arrange windows freely using Dock, Tab or Float.\nSample, Compound and Chromatogram are always displayed. Open Edit Sheet, Report Sheet and Calibration Curve from Edit. The layout at exit is restored on the next launch.
dock_position_menu=The ▼ menu controls window placement.\nFloat: move and resize the window independently. Dock: return it to the main window. Auto Hide: collapse it to an edge tab. Hide: hide the window.\nDrag a tab or title to move the window.
layout_reset=Reset layout restored the default arrangement.\nSample is on the left, Compound at the top, Chromatogram in the center and Calibration Curve to its right. Edit Sheet and Report Sheet can appear as separate windows.
ja_summary=Peak judgements\nGreen: {green}  Yellow: {yellow}  Red: {red}  Gray: {gray}
ja_summary_red=[Review needed] {red} peaks have a red judgement. Review them in Compound and Chromatogram.\nThe judgement reason appears in Compound's Status column. Status is updated automatically and is read-only.
menu_file=The File menu provides measurement data loading, Excel Import / Export, and Save project / Load project for analysis state.
menu_edit=The Edit menu opens Edit Sheet, Report Sheet and Calibration Curve. Reset layout restores the default window arrangement.
menu_help=The Help menu opens Setting, Demonstration and Assistant.\nThe version is shown near Serial passcode in Setting. Demonstration loads the measurement data you select, quantifies compounds one by one and saves Report Sheet's Summary as Excel. Use Pause / Resume or Esc to pause, and Stop to end.
demonstration_started=Demonstration started.\nSelected measurement files: {files}\nThe quantified Summary will be saved to "{file}". Follow progress in Compound and Chromatogram.
demonstration_summary_saved=Demonstration completed.\nThe Summary with the latest quantitation results was saved to "{file}". You can also review it in Report Sheet.
edit_spread_sheet=Edit Sheet lets you review and edit Compound name, Comment, Comment2, peak ranges, Alignment, Area value, Intensity threshold and other fields.\nChromatogram quantitation, color changes, alignment and sample additions/removals are reflected automatically while preserving the active sheet, selection, scroll and zoom. Press Save to apply your edits.
edit_spread_sheet_closed=Edit Sheet closed. Reopen it from Edit > Edit Sheet. Other windows and analysis remain available.
edit_spread_sheet_hidden=Edit Sheet hidden. Show it again from Edit > Edit Sheet. It can be displayed alongside Report Sheet.
ai_train=AI Train learns peak selection from chromatograms marked TRUE in the IsChecked sheet.\nReview examples with and without defined peak ranges before running it.
meta_train=Meta Train saves peak Start / End values, comments and other Edit Sheet settings for reuse with matching compounds.\nReview the sheet before running it.
ai_pick=AI Pick automatically selects candidate peaks from chromatograms.\nCandidates meeting confidence, S/N, peak width, Intensity threshold and other criteria become peak ranges. Review Chromatogram and the judgement colors afterward.
meta_pick=Meta Pick applies peak Start / End values and other settings saved by Meta Train to matching compounds.\nNo peak range is set for chromatograms below Intensity threshold.
ai_meta_pick=AI/Meta Pick runs automatic peak selection and applies saved peak ranges in one operation.\nReview Chromatogram and the judgement colors afterward.
ai_inspector=AI Inspector opened.\nSample: {sample}\nCompound: {compound}\nReview the chromatogram, normalized peak shape, candidate probability, S/N and acceptance/rejection reasons. This view does not change peak ranges or quantitation results.
report_spread_sheet=Report Sheet shows Summary and Calibration.\nMouse quantitation and sample additions/removals are reflected automatically while preserving the active sheet, selection, scroll and zoom. Cancel pauses updates, Resume restarts them, and Update recalculates the report.
report_spread_sheet_closed=Report Sheet closed. Reopen it from Edit > Report Sheet. Other windows and analysis remain available.
report_spread_sheet_hidden=Report Sheet hidden. Automatic synchronization continues unless updates are paused. Show it again from Edit > Report Sheet.
report_refresh=Update Summary and Calibration with the latest analysis results.\nThey normally update automatically after mouse quantitation. If an update takes too long, pause it with Cancel at the bottom right of Report Sheet.
report_update_cancelled=Automatic Report Sheet updates paused.\nPress Resume to include changes made while paused and restart automatic synchronization. Resume and update the report before using Stats.
report_update_timeout=[Review needed] The Summary / Calibration update did not finish within two minutes.\nRetry with Resume at the bottom right of Report Sheet. If this recurs, reduce the number of samples or review the displayed error.
report_update_resumed=Automatic Report Sheet synchronization resumed. Summary and Calibration will update with the latest analysis results.\nSubsequent mouse quantitation and sample changes will also be reflected automatically.
stats_waiting=Stats updates Summary before opening Precheck / Box Plot.\nWhile waiting, use Cancel at the bottom right of Report Sheet to stop the update.
stats_report_paused=Report Sheet updates are paused. Press Resume at the bottom right to update the report before selecting Stats.
calibration_curve=Calibration Curve opened.\nIt shows the compound selected in Compound. Target: {compound}; measurement points: {points}.\nClick a point or Use to include/exclude it, then Apply to update Calibration.
calibration_waiting=Preparing the selected compound's Calibration Curve. It will appear when the Summary / Calibration update finishes.
calibration_unavailable=The selected compound's Calibration Curve is unavailable.\nReason: {reason}\nCheck the Compound selection, Sample Group=CC and Conc., and the Report Sheet update state.
calibration_curve_hidden=Calibration Curve hidden. Show it again from Edit > Calibration Curve or Curve in Report Sheet.
stats=Stats opened.\nSamples: {samples}; compounds: {compounds}; quantitative values: {quant}\nPrecheck:\n- Samples: {samples}\n- Groups with fewer than 3 samples: {small_groups}\n- Unassigned groups: {unassigned_groups}\n- Missing values: {missing_cells} ({missing_rate})\n- Zero variance: {zero_variance}\n- Extreme outliers: {outliers}\n- Selected variables: {selected_variables}; variables exceeding the sample count: {excess_variables}\nReview the warnings and select compounds before analysis.
stats_pca=PCA summarizes quantitation patterns across many compounds as PC1 and PC2.\nSamples plotted close together have similar overall quantitation patterns.
stats_opls_da=OPLS-DA displays differences between two selected groups.\nThe horizontal axis represents variation related to group differences; the vertical axis represents other variation.
stats_volcano=Volcano Plot displays both the magnitude and statistical significance of changes between two groups.\nCompounds farther to the left or right and higher on the plot are candidates with larger differences.
stats_dendrogram=Dendrogram / Heat Map displays compound and sample quantitation patterns using colors and a tree.\nItems on nearby branches have more similar quantitation patterns.
config_general=Main contains settings for quantitation, Chromatogram display, data loading, XIC sheet extraction and RT correction, Demonstration, Assistant and other basic functions.\nConfigure reference standards in the XIC sheet RT column under Main > Scan XIC. Native MRM can use these standards without enabling XIC extraction.\nPress OK to apply changes.
config_ai_pca=Stats contains settings for automatic peak selection, training, statistical analysis, missing values, group colors and plot display.
config_show=Show selects the fields displayed in Sample, Compound and Chromatogram.\nPress OK to apply changes.
front_displayed_sample_changed=Front Displayed Sample changed to "{sample}".\nThe selected sample's chromatogram is displayed in front.
area_value_changed=Area value changed to "{area_value}".\nThis setting is used to calculate area for the next peak range you specify.
chromatogram_color_changed=Chromatogram color changed to "{color}".\nTargets: {count}. Edit Sheet and Report Sheet update while preserving their view positions.
chromatogram_alignment_changed=Alignment completed.\nTargets: {count}. Chromatogram and the sheets are updated while preserving the active sheet and view position.
range_button=In Range mode, drag with the left mouse button on Chromatogram to set the view range.\nLeft-click or double-click to return to the full view.
main_button_data_cursor=DataCursor toggles the values shown for the cursor position on Chromatogram.
main_button_legend=Legend toggles the Chromatogram legend and sample names.
main_button_copy_clip=Copy to Clip copies the current Chromatogram to the clipboard using the selected format and scale.
main_button_color_red=R makes the selected chromatograms red. Shortcut: R
main_button_color_white=W makes the selected chromatograms white. Shortcut: W
main_button_color_green=G makes the selected chromatograms green. Shortcut: G
main_button_color_blue=B makes the selected chromatograms blue. Shortcut: B
main_button_color_purple=P makes the selected chromatograms purple. Shortcut: P
main_button_color_yellow=Y makes the selected chromatograms yellow. Shortcut: Y
main_button_color_orange=O makes the selected chromatograms orange. Shortcut: O
main_button_alignment=Alignment aligns the selected chromatograms to the reference peak's RT.\nChromatograms below Intensity threshold are excluded. Shortcut: A
main_button_alignment_cancel=Cancel removes alignment from the selected chromatograms and restores their RT and peak ranges. Shortcut: Z
main_button_range=Range lets you drag with the left mouse button on Chromatogram to set the view range.\nLeft-click or double-click to return to the full view.
main_button_range_lock=Turn LOCK on to prevent peak range selection by left-dragging on Chromatogram.\nIt does not affect view range changes or other operations.
open_data_start=Open Data started.\nSelected files: {files}; concurrent reads: {parallel}\nThe Sample pane is unavailable until loading finishes.
open_data_completed=Open Data completed.\nSuccessful files: {successful_files}/{files}; samples added: {samples}; compounds added: {compounds}\nNames containing _numberppb or ##number automatically set Group=CC and Conc. Loading continues even if a warning about different measurement conditions appears.
open_data_completed_with_errors=[Review needed] Open Data could not load some files.\nSuccessful files: {successful_files}/{files}; failed: {failed}; samples added: {samples}; compounds added: {compounds}\nAffected items: {failed_items}\nCheck the supported formats, accompanying data, settings and access permissions.
open_data_failed=[Review needed] Open Data failed.\nSelected files: {files}\nError: {error}\nCheck the supported formats, accompanying data, settings and access permissions.
drag_drop_start=Drag-and-drop loading started.\nReceived: {requested}; accepted: {accepted}; skipped before loading: {skipped}
drag_drop_rejected=[Nothing loaded] No new data is available to load.\nUnsupported: {unsupported}; duplicate drops: {duplicate_drop}; already loaded: {already_loaded}; unresolved locations: {missing_paths}
drag_drop_completed=Drag-and-drop loading completed.\nSuccessful files: {successful_files}/{accepted}; samples added: {samples}; compounds added: {compounds}\nNames containing _numberppb or ##number automatically set Group=CC and Conc. Report Sheet updates automatically when open.
drag_drop_completed_with_issues=[Review needed] Some files loaded; others were skipped or failed.\nSuccessful files: {successful_files}/{accepted}; failed: {failed}; skipped: {skipped}\nSamples added: {samples}; compounds added: {compounds}\nUnsupported: {unsupported}; duplicate drops: {duplicate_drop}; already loaded: {already_loaded}; unresolved locations: {missing_paths}\nDetails: {read_errors}
drag_drop_failed=[Review needed] Drag-and-drop loading failed.\nAccepted: {accepted}; failed: {failed}; skipped: {skipped}\nUnsupported: {unsupported}; duplicate drops: {duplicate_drop}; already loaded: {already_loaded}; unresolved locations: {missing_paths}\nDetails: {read_errors}
import_start=Import started.\nFile: {file}\nCurrent data: {samples} samples, {compounds} compounds\nScreen controls are unavailable until import finishes.
import_start_unsaved=[Review needed] There are unsaved analysis changes.\nImport file: {file}\nUse Save project first if you need to keep them.
import_completed=Import completed.\nFile: {file}\nChanged samples: {changed_samples}; compounds: {changed_compounds}\nUse Save project if needed.
import_completed_no_changes=Import completed without changes.\nFile: {file}\nCheck that the sample names and compound IDs in Excel match the current data.
import_failed=[Review needed] Import failed.\nFile: {file}\nError: {error}\nSamples that may have changed: {changed_samples}; compounds: {changed_compounds}
export_start=Export started.\nDestination: {file}\nData: {samples} samples, {compounds} compounds\nScreen controls are unavailable until export finishes.
export_completed=Export completed.\nFile: {file}\nData: {samples} samples, {compounds} compounds
export_completed_unsaved=Export completed.\nFile: {file}\nData: {samples} samples, {compounds} compounds\n[Review needed] There are unsaved analysis changes. Use Save project if needed.
export_failed=[Review needed] Export failed.\nDestination: {file}\nError: {error}
project_save_start=Save project started.\nDestination: {file}\nData: {samples} samples, {compounds} compounds
project_save_completed=Save project completed.\nFile: {file}\nAnalysis state saved for {samples} samples and {compounds} compounds.
project_save_failed=[Review needed] Save project failed.\nDestination: {file}\nError: {error}
project_load_start=Load project started.\nFile: {file}\nSamples will be added to the current data. You will be asked before an existing sample with the same name is overwritten.
project_load_start_unsaved=[Review needed] There are unsaved analysis changes.\nProject to load: {file}\nUse Save project first if you need to keep them.
project_load_completed=Load project completed.\nFile: {file}\nAdded: {samples} samples, {compounds} compounds
project_load_failed=[Review needed] Load project failed.\nFile: {file}\nError: {error}
unsaved_exit_warning=[Review needed] There are unsaved analysis changes.\nThey will be lost if you exit. Cancel Exit and use Save project if you need to keep them.
autopilot_watch_started=Demonstration started.\nIt loads the selected measurement data, quantifies compounds one by one, then saves Summary.\nUse Pause / Resume or Esc to pause, and Stop to end.
autopilot_file_detected=Demonstration found the selected measurement data.\nFile: {file}\nQuantitation starts automatically after loading.
autopilot_file_loaded=Demonstration loaded the measurement data.\nFile: {file}\nSamples added: {samples}\nCompounds will be quantified one by one.
autopilot_ai_pick_started=Demonstration quantitation started.\nCompounds: {compounds}\nFollow sequential progress in Compound and Chromatogram.
autopilot_ai_pick_completed=Demonstration quantitation completed.\nChromatograms updated: {updated}; compounds reviewed: {compounds}\nReport Sheet's Summary will now update.
autopilot_pca_waiting=Demonstration is waiting for Summary.\nLoaded so far: {count}/{required}\nPress Stop to end without saving Summary.
autopilot_trend_normal=Demonstration quantitation completed.\nFile: {file}\nReview Summary in Report Sheet.
autopilot_trend_warning=[Review needed] Review the Demonstration results.\nFile: {file}\nSome compounds need review. Check Chromatogram and the judgement colors.
autopilot_trend_unavailable=[Review needed] Demonstration could not finish.\nReason: {reason}\nCheck the measurement data, compounds, peak ranges and Intensity threshold.
autopilot_read_failed=[Loading failed] Demonstration could not load the measurement data.\nFile: {file}\nError: {error}\nCheck that the data is ready and that accompanying data and access permissions are available.
autopilot_analysis_failed=[Quantitation failed] Measurement data loaded, but automatic quantitation could not finish.\nFile: {file}\nError: {error}\nCheck compound settings, peak ranges and Intensity threshold.
autopilot_watch_error=[Review needed] Demonstration cannot access the target folder.\nError: {error}\nCheck the folder location and access permissions.
